pydantic-zarr
Installation
pip install -U pydantic-zarr
# or, with zarr i/o support
pip install -U "pydantic-zarr[zarr]"
Getting help
- Docs: see the documentation for detailed information about this project.
- Chat: We use Zulip for project-related chat.
Example
import zarr
from pydantic_zarr import GroupSpec
group = zarr.group(path='foo')
array = zarr.create(store = group.store, path='foo/bar', shape=10, dtype='uint8')
array.attrs.put({'metadata': 'hello'})
# this is a pydantic model
spec = GroupSpec.from_zarr(group)
print(spec.model_dump())
"""
{
'zarr_format': 2,
'attributes': {},
'members': {
'bar': {
'zarr_format': 2,
'attributes': {'metadata': 'hello'},
'shape': (10,),
'chunks': (10,),
'dtype': '|u1',
'fill_value': 0,
'order': 'C',
'filters': None,
'dimension_separator': '.',
'compressor': {
'id': 'blosc',
'cname': 'lz4',
'clevel': 5,
'shuffle': 1,
'blocksize': 0,
},
}
},
}
"""
History
This project was developed at HHMI / Janelia Research Campus. It was originally written by Davis Bennett to solve problems he encountered while working on the Cellmap Project team. In December of 2024 this project was migrated from the janelia-cellmap github organization to zarr-developers organization.
1 maintainer
Metadata
1 maintainer
Release files for pydantic-zarr 0.10.0
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| File | Size | Uploaded | Provenance | |
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| pydantic_zarr-0.10.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 133.2 kB
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