This release is a pre-release and may not be stable for production use.
PyMix - The Python mixture package Author: Alexander Mendez Original Author: Benjamin Georgi Contact: georgi@molgen.mpg.de
Installation Instructions:
Required Packages
Python (version 2.5+ recommended, tested with 2.7)
Numpy (version 1.6?, tested with 1.6)
GSL GNU Scientific library
Optional Packages
GHMM for mixtures of HMMs
pylab for plotting functions in plotMixture.py
How to install ?
Extract the tarball to some directory of your choice. Change into the directory and run:
python setup.py build python setup.py install –prefix=/some/where
If you wish to pull down the github version you can use pip:
pip install git+https://github.com/ajmendez/PyMix.git
It is now part of pypi:
pip install pymix
After the installation is completed I would recommend to run mixtureunittests.py to check whether everything is in order.
To get the GSL on OSX I recomend using homebrew to build the universal package so that it works with both the i386 version in EPD:
brew install gsl –universal
Documentation:
Example code for most aspects of the library can be found in the pymix/examples subdirectory and mixtureunittest.py. Automatically generated documentation for the module is available on the Pymix home page www.pymix.org.
1 maintainer
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