scflowpy
scFlowPy is a helper package to bridge scFlow with the Python ecosystem. A typical use case is to allow tertiary scRNAseq analyses on scFlow outputs using Python tools (e.g. Tensorflow, PyTorch, Scanpy, and others).
The core function currently is provided by read_sce(), allowing users to read any SingleCellExperiment object output by scFlow (or by the nf-core/scflow pipeline) into the Annotated data (AnnData) format.
Free software: GNU General Public License v3
Documentation: https://scflowpy.readthedocs.io.
Credit
Written by Dr Combiz Khozoie for The Department of Brain Sciences, Imperial College London.
1 maintainer
Metadata
1 maintainer
Release files for scflowpy 0.7.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
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| scflowpy-0.7.4.tar.gz | 10.3 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
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| scflowpy-0.7.4-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details |
Total release size: 14.9 kB
Release files / scflowpy-0.7.4.tar.gz
| Download URL | scflowpy-0.7.4.tar.gz |
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| Size | 10.3 kB |
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Release files / scflowpy-0.7.4-py2.py3-none-any.whl
| Download URL | scflowpy-0.7.4-py2.py3-none-any.whl |
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| Size | 4.6 kB |
| Tags | Python 2 Python 3 |
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