VCFSYNONYMOUS
Giving .gff3 and .fasta files of a genome and .vcf detected SNPs onto this genome, VCFSYNONYMOUS returns two .vcf files. The first one contains synonymous SNPs and the second one contains non-synonymous SNPs.
INSTALLATION
pip3 install vcfsynonymous
GET STARTED
vcfsynonymous --vcf tests/data/sample.vcf \
--genome tests/data/genome.fasta \
--annotation tests/data/genome.gff3
python -m vcfsynonymous --vcf tests/data/sample.vcf \
--genome tests/data/genome.fasta \
--annotation tests/data/genome.gff3 \
--output_prefix res
upload package
pip3 uninstall vcfsynonymous
rm -rf build/
rm -rf dist/
rm -rf vcfsynonymous.egg-info/
python setup.py sdist bdist_wheel
pip3 install .
twine upload dist/*
1 maintainer
Metadata
1 maintainer
Release files for vcfsynonymous 0.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
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| vcfsynonymous-0.2.0.tar.gz | 5.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| vcfsynonymous-0.2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 12.2 kB
Release files / vcfsynonymous-0.2.0.tar.gz
| Download URL | vcfsynonymous-0.2.0.tar.gz |
|---|---|
| Size | 5.2 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/49.2.0.post20200714 requests-toolbelt/0.9.1 tqdm/4.47.0 CPython/3.8.3
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Release files / vcfsynonymous-0.2.0-py3-none-any.whl
| Download URL | vcfsynonymous-0.2.0-py3-none-any.whl |
|---|---|
| Size | 7.1 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/49.2.0.post20200714 requests-toolbelt/0.9.1 tqdm/4.47.0 CPython/3.8.3
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