10 projects
spestimator
A tool to predict bacterial species from fasta files using RefSeq 16S.
resistogrid
Pivot NCBI AMRFinder and AMRFinderPlus long-format TSV outputs into sample-by-gene matrices.
roundabout
A pipeline for plasmid outbreak clustering and visualization.
pathofetch
Download SNP matrices from NCBI Pathogen Detection
heatcluster
A Python tool for visualizing SNP matrices with hierarchical clustering
minkemap
A Python-based Circular Genome Visualization Tool
refseq-plasmid-dl
A command-line tool to download and curate RefSeq plasmid sequences from NCBI.
amplicon-coverage-inspector
Visualization of coverage for amplicon sequencing
DaisyBlast
A Python tool to find, plot, and export synteny blocks from all-vs-all BLAST.
circulocov
Circular-Aware Coverage for Draft Genomes
