2 projects
pyrootsim
Generates annotated synthetic datasets of Arabidopsis thaliana root system architectures — binary masks, per-root label images, and skeleton data — with configurable discontinuity injection (controlled occlusions producing 2, 3, or 4 connected components with OBB annotations). Ready for ML tasks such as discontinuity detection, inpainting, instance segmentation, and root graph classification.
pyphenotyper
NPEC pipeline
