19 projects
tracksdata
A Python library for multi-object tracking data structures and algorithms
hoct
Inference and tracking for the Higher-Order Cell Tracking Transformer (HOCT) model
iohub
N-dimensional bioimaging data I/O with OME metadata in Python
ultrack
Large-scale multi-hypotheses cell tracking
cisbp
Offline-first CLI for versioned CIS-BP transcription factor motif data
cuws
CuWS implements watershed segmentation from minima on GPUs.
in-silico-fate-mapping
Interactive in silico fate mapping from tracking data
pyift
Python Image Foresting Transform Library
napari-vector-graphics
Helper plugin to export napari viewer content as SVG
napari-segment-anything-2
A napari plugin for Meta's Segment Anything 2 in Images and Videos
napari-graph
Fast editable graphs in Python and numba
napari-napari
A napari viewer of the napari viewer
napari-segment-anything
Napari plugin of Segment Anything Model (SAM)
dexp
Light-sheet Dataset EXploration and Processing
segment-anything
napari-umap
A simple plugin to use with napari
napari-dexp
A simple plugin to use with napari
grabber-ift
A tool for contour-based segmentation correction (2D only).
ortho-view-napari
It displays the lateral view of the current 3D stack. This could be a starting point for a orthorviewer.
