9 projects
BranchManager
BranchManager: Answers the critical question — Has this microbial lineage already been isolated and characterised, or is it sufficiently novel and underrepresented to justify whole-genome sequencing (WGS) investment?
MetaPont
Integrated analysis of metagenomic assembly, readmapping, Kraken2 and eggNOG-mapper outputs.
GeneFior
GeneFíor: A toolkit that uses BLAST, BWA, Bowtie2, DIAMOND, Minimap2, MMseqs2 and HMMER to search DNA sequences against DNA and AA sequence databases.
PyamilySeq
PyamilySeq - A a tool to investigate sequence-based gene groups identified by clustering methods such as CD-HIT, DIAMOND, BLAST or MMseqs2.
AMRfior
AMRfior: A toolkit that uses BLAST, BWA, Bowtie2, DIAMOND, and Minimap2 to search DNA and protein sequences against AMR databases (DNA and AA) such as CARD/RGI and ResFinder.
ORForise
ORForise - A platform for analysing and comparing genome annotations.
StORF-Reporter
StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-Stop) from unannotated regions.
PhenGO
PhenoGO: A tool to build WEKA-ready ARFF files from model organism phenotype and Gene Ontology (GO) annotations.
rORForise
rORForise - A a tool to study read-level gene predictions.
