9 projects
piaso-mcp
Local stdio MCP server for the PIASO single-cell omics ecosystem (PIASO, COSG/COSGR, cytome, LARIS, Emergene, cytorete) — knowledge, the piaso.org tutorial index, the PIASO-data registry and the live PIASOmarkerDB; never compute or user data.
piaso-tools
Precise Integrative Analysis of Single-cell Omics.
cytome
Single-file multi-omics data format for single-cell biology
laris
LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics
cosg
Accurate and fast cell marker gene identification with COSG (with optional GPU acceleration)
cytorete
Cytorete — cell-type-resolved inference of gene regulatory networks and their dynamics.
preprint-fulltext
CLI + MCP toolkit that retrieves full text of bioRxiv/medRxiv/arXiv preprints as structured sections — grounding LLM/agent scientific reasoning and deep research — and builds embedding-ready corpora.
stato
Capture, validate, and transfer AI agent expertise.
emergene
EMERGENE for individual cell-based differential transcriptomic analysis across conditions.
