3 projects
oncocyrix-multicohort
Single-cell RNA-seq multicohort analysis pipeline with Scanpy (10x-only, CAR-T aware, structured outputs)
oncocyrix
OncoCyrix: a modular Scanpy-based pipeline for single-sample 10x scRNA-seq cancer analysis
GeneXpressor
DESeq2 runner (Python + rpy2) for bulk RNA-seq with auto-discovery, E2E DE, plots, HTML report.
