15 projects
arraysplitter
De Novo Decomposition of Satellite DNA Arrays into Monomers within Telomere-to-Telomere Assemblies
alpha-fold-viewer
AlphaFold3 ZIP → Standalone HTML Report with PAE heatmaps, confidence scores, and interface analysis
satellome
A comprehensive tool for satellite DNA analysis in T2T genome assemblies
fastQuast
Fast and simple Quality Assessment Tool for Large Genomes
aindex2
Perfect hash based index for genome data.
extracTR
Extract and analyze satellite DNA from raw sequences.
pyreachx
Python Code Reachability Analyzer
yatomat
Yet Another Tool for Making Artificial Genomes
Qtok
Qtok: quality control tool for tokenization
nceu
A ncurses-based Gmail inbox analyzer and manager
code2claude
A Python tool that consolidates code from a repository into a unified format for AI-assisted analysis and manipulation.
RepeatRanger
De Novo Repeat Annotation Tool for Assembled Genomes.
EchoPapers
EchoPapers: Discover and analyze the impact of academic papers through citation tracking and advanced analytics
EchoReaper
A small library for scraping websites with or without proxy
PyExp
A microframework for small computational experiments.
