4 projects
gpatch
Assemble contigs into a chromosome-scalse pseudo-assembly using alignments to a reference sequence. Download the github repository for helper scripts to automate GPatch workflows, identify and correct misjoins in the contig assembly, produce dot-plots of patched pseudoassemblies to a reference assembly, and generate chrom.sizes and liftover chains for patched pseudoassemblies.
HaplotagLR
Phasing individual long reads using known haplotype information.
LRphase
Phasing individual long reads using known haplotype information.
mapGL
Prediction of lineage-specific gain and loss of sequence elements using phylogenetic maximum parsimony.
