13 projects
gwseq-io
Process BBI (bigWig/bigBed) and HiC files
meirlop-pip
Motif Enrichment In Ranked Lists Of Peaks
map-with-tree
A Python library for reading and writing compressed, sorted key-value stores with efficient lookup using a B-tree-like structure.
gwseq-io-pp
Process BBI (bigWig/bigBed) and HiC files
reformat-rsem
Reformat RSEM output files
seq-pipeline
Pipelines to process genome-wide sequencing
gene-expression
Compute gene expression from RNA-seq
pileup-reads
Pileup reads from ChIP/ATAC/RNA-seq to make bedgraph/wig/bigwig
geneseq
Process genomic data
gencov
Process genomic data
trim-reads
Trim sequencing reads
gencov-io
Read and write genomic coverage
reformat-macs2
Reformat MACS2 output files
