12 projects
plexora
OpenSeadragon-based cellular image viewing and analysis tool.
mcmicroprep
None
histotuner
Add your description here
vitgater
Out-of-core Vitessce gating for multiplex OME-TIFF images
scimappro
Spatial single-cell analysis tools for AnnData workflows
histomap
visualize histology images with umap
scimap
Spatial Single-Cell Analysis Toolkit
vtissue
Self-Supervised Graph Transformer for Virtual Tissue Perturbation Modeling
cspot
CELL SPOTTER (CSPOT): A scalable framework for automated processing of highly multiplexed tissue images
pixelpartitioner
Tools for pixel partitioning, intensity-based segmentation, and visualization.
gatorpy
GATOR: A scalable framework for automated processing of highly multiplexed tissue images
bib2yaml
Converts a BibTeX file to YAML format
