11 projects
zarrnii
Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations
imaris-ims-zarr
Class for reading Bitplane imaris files (*.ims) as zarr, adapted from AM Watson imaris_ims_file_reader
zarrnii-plugin-api
Plugin API for extending zarrnii functionality
snakebids
BIDS integration into snakemake workflows
cfmm2tar
Download a tarballed DICOM dataset from the CFMM DICOM server
hippunfold_plot
Plotting functions for hippocampal surface maps from HippUnfold
bidsapps
CLI tool for running BIDS apps
gcnn-dmri
Graph-equivariant CNNs for diffusion MRI
funcmasker-flex
BIDS App for U-net brain masking of fetal bold MRI
hippunfold
Snakemake BIDS app for hippocampal unfolding & subfield segmentation
denoise-fmri
denoise_fmri - BIDS app for denoising fmriprep outputs
