Ancestral character reconstruction and visualisation for rooted phylogenetic trees.
Tools for extracting information from jpHMM (http://jphmm.gobics.de) output.
Simulation of rooted phylogenetic trees following an epidemiological model.
Visualisation of PastML trees.
SBML zoomable visualization utilities.
Utilities for working with metabolic models in SBML format.
Knowledge-based generalization for metabolic models in SBML format.