5 projects
fishdist
A comprehensive Python pipeline for detecting, quantifying, and analyzing FISH (Fluorescence In Situ Hybridization) spots in 3D microscopy images using deep learning and chromatic aberration correction.
pyfigures
PyFigures will assist you assemble publication ready scientific figures in no time.
batoolset
An aggregate of functions I find useful
epyseg
A deep learning based tool to segment epithelial tissues. The epyseg GUI can be uesd to build, train or run custom networks
dendritic-arborization-tracer
A tool to segment dendrites
