bioregistry

Last released May 8, 2026

Integrated registry of biological databases and nomenclatures

biomappings

Last released May 2, 2026

Curated and predicted mappings between biomedical identifiers in different namespaces

gilda

Last released Jan 7, 2026

Grounding for biomedical entities with contextual disambiguation

adeft

Last released Nov 25, 2025

Acromine based Disambiguation of Entities From Text

indra

Last released Jul 30, 2025

Integrated Network and Dynamical Reasoning Assembler

indra-curation

Last released Feb 23, 2025

INDRA Curation

famplex

Last released Jul 10, 2024

Resources for grounding protein complexes and families from text and describing their hierarchical relationships.

pybiopax

Last released May 10, 2024

A Python implementation of the BioPAX object model, and parts of PaxTools.

protmapper

Last released Jan 19, 2024

Map protein sites to human reference sequence.

emmaa

Last released Aug 1, 2021

Ecosystem of Machine-maintained Models with Automated Analysis

pykqml

Last released Nov 4, 2020

KQML messaging classes in Python.

kappy

Last released Sep 17, 2020

Wrapper to interact with the Kappa tool suite

s3edit

Last released Mar 31, 2019

Edit files from S3 directly with your default editor.

jnius_indra

Last released Sep 22, 2016

Python library to access Java classes