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15 projects

MetaPhlAn

Last released on

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.

metawibele

Last released on

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

PhyloPhlAn

Last released on

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

kneaddata

Last released on

anadama2

Last released on

AnADAMA2: Another Automated Data Analysis Management Application 2

biobakery-workflows

Last released on

bioBakery workflows: A collection of meta'omic analysis workflows

humann

Last released on

HUMAnN: The HMP Unified Metabolic Analysis Network, version 3

export2graphlan

Last released on

export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn

graphlan

Last released on

GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

panphlan

Last released on

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and *in-vivo* transcriptional activity of individual strains in metagenomic samples. PanPhlAn’s ability for strain-tracking and functional analysis of unknown pathogens makes it an efficient tool for culture-free infectious outbreak epidemiology and microbial population studies.

shortbred

Last released on

ShortBRED: a system for profiling protein families of interest at very high specificity in shotgun meta’omic sequencing data

humann2

Last released on

HUMAnN2: The HMP Unified Metabolic Analysis Network 2

ppanini

Last released on

PPANINI: Prioritization and Prediction of functional Annotations for Novel and Important genes via automated data Network Integration.

waafle

Last released on

WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events

halla

Last released on

HAllA: Hierarchically All-against-All Association Testing

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