19 projects
biosimulators-tellurium
BioSimulators-compliant command-line interface to the Tellurium/roadrunner simulator <https://tellurium.readthedocs.io/>.
biosimulators-utils
description
biosimulators-copasi
BioSimulators-compliant command-line interface to the COPASI simulation program <http://copasi.org>.
biosimulators-test-suite
Tools for validating that biosimulation tools are consistent with the BioSimulators standards
kisao
Utilities for working with the Kinetic Simulation Algorithm Ontology (KiSAO)
biosimulators-amici
BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.com/AMICI-dev/amici>.
biosimulators-xpp
BioSimulators-compliant command-line interface to the XPP simulation program.
biosimulators-gillespy2
BioSimulators-compliant command-line interface to the GillesPy2 simulation program.
biosimulators-bionetgen
BioSimulators-compliant command-line interface to the BioNetGen simulation program <https://bionetgen.org>.
biosimulators-masspy
BioSimulators-compliant command-line interface to the MASSpy simulation program.
biosimulators-cbmpy
BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sourceforge.net/>.
biosimulators-cobrapy
BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.
biosimulators-pyneuroml
BioSimulators-compliant command-line interface to the jNeuroML/pyNeuroML, NEURON, and NetPyNe simulation programs.
biosimulators-opencor
BioSimulators-compliant command-line interface to the OpenCOR simulation program.
biosimulators-boolnet
BioSimulators-compliant command-line interface to the BoolNet simulation program.
biosimulators-pysces
BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.sourceforge.net/>.
biosimulators-rbapy
BioSimulators-compliant command-line interface to the RBApy simulation program.
biosimulators-libsbmlsim
BioSimulators-compliant command-line interface to LibSBMLsim <http://fun.bio.keio.ac.jp/software/libsbmlsim/>.
biosimulators-ginsim
BioSimulators-compliant command-line interface to the GINsim simulation program.