BioSimulators

biosimulators-amici

Last released Dec 9, 2025

BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.com/AMICI-dev/amici>.

biosimulators-copasi

Last released Nov 18, 2024

BioSimulators-compliant command-line interface to the COPASI simulation program <http://copasi.org>.

biosimulators-masspy

Last released Oct 31, 2024

BioSimulators-compliant command-line interface to the MassPY simulation program <https://masspy.readthedocs.io/>.

biosimulators-pysces

Last released Oct 18, 2024

BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.sourceforge.net/>.

biosimulators-tellurium

Last released Oct 10, 2024

BioSimulators-compliant command-line interface to the Tellurium/roadrunner simulator <https://tellurium.readthedocs.io/>.

biosimulators-utils

Last released Oct 10, 2024

description

biosimulators-test-suite

Last released Sep 19, 2024

Tools for validating that biosimulation tools are consistent with the BioSimulators standards

kisao

Last released Mar 14, 2024

Utilities for working with the Kinetic Simulation Algorithm Ontology (KiSAO)

biosimulators-xpp

Last released Feb 28, 2022

BioSimulators-compliant command-line interface to the XPP simulation program.

biosimulators-gillespy2

Last released Feb 25, 2022

BioSimulators-compliant command-line interface to the GillesPy2 simulation program.

biosimulators-bionetgen

Last released Feb 25, 2022

BioSimulators-compliant command-line interface to the BioNetGen simulation program <https://bionetgen.org>.

biosimulators-cbmpy

Last released Feb 23, 2022

BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sourceforge.net/>.

biosimulators-cobrapy

Last released Feb 23, 2022

BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.

biosimulators-pyneuroml

Last released Feb 22, 2022

BioSimulators-compliant command-line interface to the jNeuroML/pyNeuroML, NEURON, and NetPyNe simulation programs.

biosimulators-opencor

Last released Jan 3, 2022

BioSimulators-compliant command-line interface to the OpenCOR simulation program.

biosimulators-boolnet

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to the BoolNet simulation program.

biosimulators-rbapy

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to the RBApy simulation program.

biosimulators-libsbmlsim

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to LibSBMLsim <http://fun.bio.keio.ac.jp/software/libsbmlsim/>.

biosimulators-ginsim

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to the GINsim simulation program.