BioSimulators

kisao

Last released Mar 14, 2024

Utilities for working with the Kinetic Simulation Algorithm Ontology (KiSAO)

biosimulators-utils

Last released Feb 16, 2024

Command-line program and library for reading, writing, validating and executing modeling projects (COMBINE/OMEX archives with SED-ML files).

biosimulators-tellurium

Last released Aug 22, 2023

BioSimulators-compliant command-line interface to the tellurium simulation program <http://tellurium.analogmachine.org>.

biosimulators-test-suite

Last released Jul 26, 2023

Tools for validating that biosimulation tools are consistent with the BioSimulators standards

biosimulators-amici

Last released Jun 28, 2023

BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.com/AMICI-dev/amici>.

biosimulators-copasi

Last released Mar 26, 2022

BioSimulators-compliant command-line interface to the COPASI simulation program <http://copasi.org>.

biosimulators-xpp

Last released Feb 28, 2022

BioSimulators-compliant command-line interface to the XPP simulation program.

biosimulators-gillespy2

Last released Feb 25, 2022

BioSimulators-compliant command-line interface to the GillesPy2 simulation program.

biosimulators-bionetgen

Last released Feb 25, 2022

BioSimulators-compliant command-line interface to the BioNetGen simulation program <https://bionetgen.org>.

biosimulators-masspy

Last released Feb 23, 2022

BioSimulators-compliant command-line interface to the MASSpy simulation program.

biosimulators-cbmpy

Last released Feb 23, 2022

BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sourceforge.net/>.

biosimulators-cobrapy

Last released Feb 23, 2022

BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.

biosimulators-pyneuroml

Last released Feb 22, 2022

BioSimulators-compliant command-line interface to the jNeuroML/pyNeuroML, NEURON, and NetPyNe simulation programs.

biosimulators-opencor

Last released Jan 3, 2022

BioSimulators-compliant command-line interface to the OpenCOR simulation program.

biosimulators-boolnet

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to the BoolNet simulation program.

biosimulators-pysces

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.sourceforge.net/>.

biosimulators-rbapy

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to the RBApy simulation program.

biosimulators-libsbmlsim

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to LibSBMLsim <http://fun.bio.keio.ac.jp/software/libsbmlsim/>.

biosimulators-ginsim

Last released Dec 14, 2021

BioSimulators-compliant command-line interface to the GINsim simulation program.