9 projects
myers-batch
Batched infix edit distance: bit-parallel Myers for aarch64 NEON and x86-64 AVX2, 7.5-10x faster than edlib single-threaded on the reference machine
minimizer-stream
Streaming canonical minimizer sketches for FASTA and FASTQ
codon-constrain
Exact finite-state synonymous codon optimization under DNA constraints
phred-consensus
Phred-aware Bayesian consensus calling for aligned reads
umi-collapse
Deterministic radius-one UMI error correction for count tables
iupac-scan
Bit-parallel scanning of degenerate IUPAC DNA motifs
lookahead-lint
Static analyzer that flags look-ahead bias and target leakage idioms in quantitative research code
holdout-first
Validation harness that fits on a small slice and demands survival on the large held-out remainder.
bar-forge
Activity-based market data bars and strictly causal normalisation transforms.
