15 projects
protein-detective
Deduce the protein from a EM density
powerfit-em
Rigid body fitting of high-resolution structures in low-resolution cryo-electron microscopy density maps
protein-quest
Search/retrieve/filter proteins and protein structures
deeprank-gnn-esm
Graph Network for protein-protein interface including language model features
haddock3
HADDOCK3
deeprank-ab
Scoring function for antibody-antigen interactions
arctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
pdb-tools
A swiss army knife for PDB files.
haddock-restraints
Python bindings for haddock-restraints
prodigy-lig
Calculate protein-small molecule binding affinities.
prodigy-prot
PROtein binDIng enerGY prediction
FANDAS
Fast Analysis of multidimensional NMR DAta Sets
proabc-2
Predicts the antibody residues that will make contact with the antigen and the type of interaction using a Convolutional Neural Network.
prodigy-cryst
Predicts if a protein complex interface is biological or crystallographic.
whiscy
WHISCY is a software that predicts protein-protein interfaces using conservation and structural information by calculating prediction scores for each surface residue based on sequence alignment.
