21 projects
abutils
Utilities for analysis of adaptive immune receptor repertoire (AIRR) data
teddympnn
A message passing neural network for protein-protein interfaces
autoimmune
Autoimmune
oplm
open protein language model
autobio
A Python package
autoantibody
Autoantibody analysis tools
ghostfold
Accurate, database-free protein folding from single sequences using structure-aware synthetic MSAs
mutable-lm
Mutable language models
ablms
ablms - package under development
somatic-lm
A Python package for somatic language models
boundry
A Python package (under development)
abstar
Germline assignment and annotation of AIRR data. Scalable from a single sequence to billions of sequences.
spir
Intermediate representation and converters for protein folding model inputs
pairplex
Demultiplex single-cell antibody repertoires with precision and paired insight.
stok
Encoder-only protein tagger (SDPA + RoPE + SwiGLU)
clonify-antibody
High-performance clonify implementation with native average-linkage clustering
scab
Single cell analysis of B cells
balm-antibody
BALM: Baseline Antibody Language Model
nwalign3
Needleman-Wunsch global sequence alignment
abcloud
abcloud
abtools
Utilities for analysis of antibody NGS data
