3 projects
pg-sui
Python machine and deep learning API to impute missing genotypes
snpio
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses.
GeoGenIE
Deep learning software package to predict geographic coordinates from genome-wide SNP data.
