9 projects
eubi-bridge
A package for converting datasets to OME-Zarr format.
micro-reader
Low-level, memory-bounded pixel reading for microscopy formats: read exactly the rectangle you ask for.
micro-reader-codecs
Native (Rust) image decoders for micro-reader: zstd, LZ4, LZW, deflate, PackBits, JPEG (incl. lossless), JPEG 2000, JPEG XL, PNG, WebP, packed bits, EER.
tilewise-ccl
Fast tile-wise connected-components labeling of large N-D arrays, returning a lazy dask array
dyna-zarr
A lightweight library for lazy operations on Zarr arrays without task graph overhead
pyrametric
Lazy, memory-bounded connected-components labeling and per-object measurement for OME-Zarr pyramids: label pyramids (from a mask), regionprops-like feature extraction, and label filtering (pyrops plugin; wraps tilewise-ccl)
ome-zarr-pyramid
Read, write and downscale OME-Zarr (NGFF) pyramids with a lazy, memory-bound Pyramid object
bioio-tifffile-fork-by-bugra
A fork of bioio-tifffile project.
bioio-ome-tiff-fork-by-bugra
A fork of bioio-ome-tiff project.
