40 projects
jump_deps
Convenience package to add dependencies for JUMP exploratory analysis
copairs
Find pairs and compute metrics between them
cp-measure
cellprofiler-library implements CellProfiler's image processing and mathematical code, and is usable as a standalone library
broad-babel
A translator of Broad and JUMP ids to more conventional names.
jump-portrait
Tools to fetch and visualize JUMP images
arrakis
caballo
yaqui
tomatl
popolvuh
nahual
nagual
mictlan
chaneque
alux
xerus
waterdog
uakari
saiga
mynah
makhor
kakapo
gaur
colugo
bubalina
aurochs
saola
smiles
kaljax
Kalman filter implemented in JAX for GPU and CPU usage
aliby
Process and analyse live-cell imaging data
aliby-baby
Birth Annotator for Budding Yeast
aliby-post
Post-processing tools for aliby pipeline.
aliby-agora
A gathering of shared utilities for the Swain Lab image processing pipeline.
aliby-extraction
aliby-parser
Log files parser for aliby pipeline.