2 projects
cyclic-gmispy
A Python package for calculating Genetic Minimal Intervention Sets (gMIS) in metabolic networks with regulatory cycles
gMCSpy
gMCSpy is a python package for the calculation of Genetic Minimal Cut sets (GMCS). In simple terms, the idea is to take a metabolic model and calculate the genetic vulnerabilities that will render the biomass production impossible. This is done through a Mixed-Integer Linear problem (MILP) formulation and the use of a linear solver.
