9 projects
dmsroute
Utilities for acquiring, parsing, validating, harmonizing, and standardizing DMS datasets from MaveDB and ProteinGym.
saberlib
Domain-agnostic classical supervised machine learning for classification, regression, tuning, and benchmarking.
silkroute
Tool to download and integrate biological data from multiple APIs (UniProt, AlphaFold, BioGRID, KEGG, etc.)
ruddy
Domain-agnostic statistical exploratory data analysis for tabular datasets and feature representations.
roxylib
Protein sequence descriptors for machine learning.
sylphy
Protein sequence representation: encoders, embeddings, and reductions.
biosieve
Redundancy reduction and leakage-aware dataset partitioning for biological ML.
erislib
Eris: A modular library for protein structural representations and graph-based encoders.
typvend
Typst Package Vendoring CLI
