12 projects
cellmaps-coembedding
A tool to generate coembeddings from IF image embeddings and PPI network embeddings
cellmaps-generate-hierarchy
A tool to generate hierarchies from protein to protein interaction networks
cellmaps-vnn
The Cell Maps VNN Tool enables creation, training, and usage of an interpretable neural network-based models that predict cell response to a drug.
ndex2
Nice CX Python includes a client and a data model.
cellmaps-pipeline
Runs full Cell Maps pipeline
cellmaps-utils
Contains utilities needed by Cell Maps tools
cellmaps-ppi-embedding
A tool to generate embeddings from networks
cellmaps-image-embedding
A tool to generate embeddings from HPA IF images
cellmaps-hierarchyeval
A tool to evaluate hierarchies with known resources
cellmaps-imagedownloader
A tool to download specified image data from the Human Protein Atlas website using CSV file or to copy data from CM4AI dataset
cellmaps-ppidownloader
A tool to download AP-MS data for Cell Maps pipeline
cdapsutil
Python utilities for CDAPS
