14 projects
equilibrator-pathway
Pathway analysis tools by eQuilibrator
equilibrator-api
Calculation of standard thermodynamic potentials of biochemical reactions
equilibrator-pathway-core
MDF and enzyme cost minimization for fully specified pathway models, with no compound database
sbtabpy
SBtab - Standardised Data Tables for Systems Biology
equilibrator-assets
Generate cache assets from MetaNetX content.
component-contribution
A method for estimating the standard reaction Gibbs energy of biochemical reactions
equilibrator-cache
Cache application for compounds, reactions, and enzymes
equilibrator-cache-data
Bundled mini compound cache and accession index for equilibrator-cache
symbolic-compartmental-model
Analyzing protein-complex dynamics using metabolic age quantified by stable-isotope labeling
weighted-voronoi
Weighted Voronoi diagrams, maps and treemaps in pure Python -- no JavaScript engine required
optslope
OptSlope - A tool for metabolic engineering, based on the OptSlope algorithm
pbalancing
Parameter balancing of metabolic models in systems biology
equilibrator-cheminfo
Light adapter classes around Open Babel, RDKit, and ChemAxon for the functionality needed in eQulibrator.
enzyme-cost-minimization
Enzyme Cost Minimization - a package for calculating the minimal enzyme cost of a metabolic pathway
