11 projects
manylp
Certified batched solver for large batches of small, structurally-shared, bounds-parametric linear programs (CPU + GPU)
muode
Automated ODE-based simulation engine for large-scale microbial community dynamics from MAGs
hdlib
Hyperdimensional Computing Library for building Vector Symbolic Architectures in Python
team-core
Orchestrate a cluster of containerized local LLMs (via Ollama), each with a specific persona and role, that collaborate to solve a goal.
team-galaxy
Galaxy Project extensions for the team multi-agent LLM framework.
MetaSBT
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
chopin2
Supervised Classification with Hyperdimensional Computing
BioPathAI
BioPathAI: a Python tool for the analysis of biological pathways with machine learning techniques
igv-flask
Flask webserver for rendering igv.js
minimizers
A Python package for extracting minimizers from sequence data
honto
A novel method for assessing and measuring homophily in networks
