Set of utilities on sequences and BAM files
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication