13 projects
litfetch
Identifier -> the retrievable artifacts of a scholarly article: a pluggable source ladder + identifier resolvers.
clinvar-proto
Typed protobuf messages and an XML converter for NCBI ClinVar VCV XML.
pubmed-proto
Typed protobuf messages and an XML converter for NLM PubMed XML.
xsd-former
Generate Protobuf definitions, JSON Schema, and Python XML-to-protobuf converters from XSD and DTD schemas.
hgvs-weaver
High-performance HGVS parser for Python (Rust powered)
semantic-code-review
A semantic diff reviewer for judging agent-authored changes — the LLM directs attention, you decide.
postern
Run untrusted Python in an OS-isolated sandbox whose only exit is a host-defined hatch.
anchorite
Spatial text alignment and resolution for document OCR
hgvs-weaver-data
Reference data for the hgvs-weaver HGVS engine: a builder that cuts RefSeq and Ensembl releases into gene bundles, and the DataProvider that reads them.
grus
Pedigree IR (protobuf) + deterministic Bennett-standard SVG renderer + importers.
litdown
Convert scholarly full-text XML — JATS (articles and BITS book parts) and Elsevier — to Markdown.
seq-smith
A Rust-based sequence alignment library for Python.
gemini-ocr
Hybrid OCR with gemini and DocumentAI
