Python tools for detecting structural variation from nanopore sequence data
Python tools for detecting somatic structural variation from cancer genome sequencing data.
Python programs for analyzing splicing junctions
Python programs for analyzing GenomonSV results
Python tools for calculating fkpm values from RNA-seq
Python programs for processing gene annotation files
Python tools for extracting intron retention events
Python tools for detecting mutations causing splicing changes
Python tools for processing chimeric reads and lists of gene fusions.
Python tools for extracting highly confident fusion transcripts from the results of several RNA-seq alignment tools.