19 projects
funtracks
Cell tracking data model
motile-tracker
Application for interactive tracking with global optimization
gunpowder
A library to facilitate machine learning on large, multi-dimensional images.
morphix
Trainable Morphogenesis Simulation in JAX
ilpy
Unified API for ILP solvers.
lsd-lite
Simple LSD and affinity graph computation
spatial-graph
A spatial graph datastructure for python.
finn-viewer
n-dimensional array viewer for cell tracking data in Python
structsvm
Structured Bundle Method for Risk Minimization.
funlib.persistence
Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
motile-toolbox
A toolbox for tracking with (motile)[https://github.com/funkelab/motile].
motile-plugin
Tracking with motile
daisy
Blockwise task scheduler for processing large volumetric data.
funlib.show.neuroglancer
None
motile
Multi-Object Tracker using Integer Linear Equations
funlib.geometry
A package for Coordinates, Rois and common operations in Coordinate spaces.
augment-nd
Simple elastic augmentation for ND arrays.
funlib.math
some math functions
lsds
Local Shape Descriptors.
