46 projects
biolink-model
The Biolink Model is a high-level data model designed to standardize types and relationships in biological knowledgebases.
linkml
Linked Open Data Modeling Language
linkml-runtime
Runtime environment for LinkML, the Linked open data modeling language
linkml-owl
OWL mappings for Linked Open Data Modeling Language
linkml-model
Metamodel schema, documentation, and specification for the Linked Open Data Modeling Language (LinkML)
funowl
Python rendering of the OWL Functional syntax
fhirclient
A flexible client for FHIR servers supporting the SMART on FHIR protocol
PyShEx
Python ShEx Implementation
ShExJSG
ShExJSG - Astract Syntax Tree for the ShEx 2.0 language
PyShExC
PyShExC - Python ShEx compiler
PyJSG
Python JSON Schema Grammar interpreter
linkml-datalog
Datalog inference over LinkML schemas and data
sparqlslurper
SPARQL Slurper for rdflib
rdflib-shim
Shim for rdflib 5 and 6 incompatibilities
monomorphic
Polymorphic base type converter to support brittle python libraries
rdflib-jsonld
rdflib extension adding JSON-LD parser and serializer
SNOMEDToOWL
"Spackman OWL" transformation test and validation tool
rdflib-pyldmod-compat
Conversion between rdflib and PyLD data formats for compatibility
jsonasobj2
JSON as python objects - version 2
template-configurator
Configuration tool for LinkML model generation
template-config-model
Configuration parameters for LinkML model generation
PyLDmod
modified Python implementation of the JSON-LD API
jsonasobj
JSON as python objects
biolinkml
Biolink Modeling Language
hbreader
Honey Badger reader - a generic file/url/string open and read tool
fhirtordf
FHIR JSON to RDF Conversion Tool
definednamespace
Proposed replacement for rdflib ClosedNamespace
i2b2model
i2b2 Model Wrapper
sparql-slurper
SPARQL Slurper for rdflib
shex-to-shexj
ShExC to ShExJ conversion utility
fhir-rdf-validator
FHIR RDF Validation Tool
fhirparser
FHIR StructureDefinition Parsing tool
fhir-loader
FHIR loading tool
BiolinkMG
Schema and generated objects for biolink data model and upper ontology
CFGraph
rdflib collections flattening graph
cachejar
File based cache for objects derived from files or urls
i2FHIRb2
FHIR in i2b2 model conversion tools
dynprops
Dynamic Properties - support for complex tsv and sql values
yadict_compare
Yet another dictionary comparison tool with filtering and reporting
dirlistproc
Directory list wrapper for batch file processing
dbgap_to_owl
Utility to convert dbgap schema to OWL representation
fhir_to_sdo
HL7 FHIR to schema.org conversion utility
hcls_fhir_rdf
FHIR to RDF conversion tools
dbgap
dbGaP to bioCaddie conversion utility
schema_to_context
JSON Schema to JSON LD Extraction Utility
pyjxslt
Python XSLT 2.0 Gateway
