14 projects
napari-nifti
A napari plugin for reading and writing NIFTI files that have the extension .nii or .nii.gz.
acvl-utils
Super cool utilities that we just love to use
batchgenerators
Data augmentation toolkit
HD-BET
Tool for brain extraction
batchgeneratorsv2
Batchgenerators but better
nnunetv2
nnU-Net is a framework for out-of-the box image segmentation.
mzarr
Mzarr (Multi-Resolution Zarr) is a Python library for working with the Mzarr image format
dynamic-network-architectures
none
ParticleSeg3D
Scalable, out-of-the box segmentation of individual particles from mineral samples acquired with micro CT
napari-mzarr
A reader and writer plugin for the Mzarr image format.
napari-sam
Segment anything with Meta AI's new SAM model!
nnunet
nnU-Net. Framework for out-of-the box biomedical image segmentation.
hd-glio
Tool for brain tumor segmentation. This is the result of a joint project between the Department of Neuroradiology at the Heidelberg University Hospital and the Division of Medical Image Computing at the German Cancer Research Center (DKFZ). See readme.md for more information
hd-gliomouse
Tool for brain tumor segmentation in mice. This is the result of a joint project between the Department of Neuroradiology at the Heidelberg University Hospital and the Division of Medical Image Computing at the German Cancer Research Center (DKFZ). See readme.md for more information
