15 projects
twhy
Zoomable microscopy, image and PDF previews in a text terminal
omeify
Predictable, metadata-minimized OME-TIFF and OME-Zarr image I/O
azure-vault-loader
Load secrets from Azure key vault into the environment of a process
tiff-inspector
A package for examining the structure and contents of the metadata contained within tiff files
ome-schema
A Python package for accessing local OME schema files
pythologist
inForm PerkinElmer Reader - Python interface to read outputs of the PerkinElmer inForm software
pythologist-reader
inForm PerkinElmer Reader - Python interface to read outputs of the PerkinElmer inForm software
pythologist-image-utilities
Functions to assist in working with image files
pythologist-test-images
Real and simulated data for testing image analysis software
informverify
inForm PerkinElmer file assumption verification
GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
iobio
Simple tools for analysis
xcell
Python CLI and module for running the xCell package with Python Pandas inputs and outputs.
AlignQC
Python and R based tool for assessing the quality of alignments
seq-tools
Python tools for working with biological sequence data
