25 projects
cellarr-frame
A wrapper for managing DataFrames backed by TileDB
singler
Python bindings to the singleR algorithm to annotate cell types from known references.
scranpy
Analyze multi-modal single-cell data!
dolomite-ranges
Stage and load genomic ranges from disk.
mattress
All your matrix representations belong here!
dolomite-base
Save and load Bioconductor objects in Python
knncolle
Nearest Neighbor Detection for Bioconductor
cellarr-array
Base class for handling TileDB backed arrays.
SewerRat
Python client for the SewerRat API
pygobbler
Python client for the Gobbler service
cellarr
TileDB-based array storage for genomics data collections.
dolomite-sfe
ArtifactDB representation for SFE.
dolomite-spatial
Read and write Spatial Experiments to takane representations
firmament
Methods to perform gene signature search on scRNA-seq datasets
dolomite-matrix
Save and load matrices in the dolomite framework
GenomicArrays
Genomic region based arrays backed by TileDB
celldex
Index of Reference Cell Type Datasets
dolomite-mae
Save and load multi-assay experiments in the dolomite framework!
dolomite-sce
Save and load single-cell experiments in the dolomite framework!
dolomite-se
Save and load summarized experiments in the dolomite framework!
gypsum-client
Python client to gypsum REST API
dolomite
Wrapper package for all dolomite-* packages.
dolomite-schemas
JSON schemas for bioconductor objects.
epivizFileParser
Parse and Query Genomic File Formats.
epivizFileServer
A python library to interact, explore and compute data directly from genomic files.
