31 projects
GenomicRanges
Container class to represent and operate over genomic regions and annotations.
hdf5array
HDF5-backed objects for array and matrix like data
tiledbarray
TileDb backed objects for array and matrix like data
SingleCellExperiment
Container class for single-cell experiments
SummarizedExperiment
Container to represent data from genomic experiments
dolomite-sce
Save and load single-cell experiments in the dolomite framework!
dolomite-se
Save and load summarized experiments in the dolomite framework!
dolomite-ranges
Stage and load genomic ranges from disk.
dolomite-base
Save and load Bioconductor objects in Python
dolomite-matrix
Save and load matrices in the dolomite framework
scranpy
Analyze multi-modal single-cell data!
mattress
All your matrix representations belong here!
DelayedArray
Delayed array operations from Bioconductor
dolomite
Wrapper package for all dolomite-* packages.
dolomite-mae
Save and load multi-assay experiments in the dolomite framework!
BiocFrame
Flexible dataframe representation to support nested structures.
FileBackedArray
File backed objects for array and matrix like data
IRanges
Python implementation of the [**IRanges**](https://bioconductor.org/packages/IRanges) Bioconductor package.
rds2py
Parse and read RDS files as Python representations
biocutils
Utilities to use across the biocpy packages.
MultiAssayExperiment
Container class for representing and managing multi-omics genomic experiments
mopsy
Matrix operations for numpy and scipy
singler
Python bindings to the singleR algorithm to annotate cell types from known references.
dolomite-schemas
JSON schemas for bioconductor objects.
BiocGenerics
Generics for core data structures in biocpy
assorthead
Assorted C++ headers
cpptypes
Automatically creates the C++ and Python-side wrappers for ctypes bindings.
BiocPy
Interface to all [BiocPy](https://github.com/BiocPy) packages
pyBiocFileCache
File based cache for resources and metadata
epivizFileParser
Parse and Query Genomic File Formats.
epivizFileServer
A python library to interact, explore and compute data directly from genomic files.
