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Karr Lab

Username    karrlab
Date joined   Joined

25 projects

de-sim

Last released

object-oriented, discrete-event simulation tool for data-intensive modeling of complex systems

wc-utils

Last released

Utilities for whole-cell modeling

obj-tables

Last released

Tools for creating and reusing high-quality spreadsheets

gdoc-down

Last released

Download Google documents to files

bcforms

Last released

Toolkit for concretely describing macromolecular complexes

bpforms

Last released

Unambiguous representation of modified DNA, RNA, and proteins

karr-lab-aws-manager

Last released

Package to manage aws services run by karr lab

datanator-query-python

Last released

A package to query and format the data in the integrated Datanator database

biosimulations-query

Last released

A python package for querying the biosimulations database

wc-onto

Last released

Ontology for whole-cell modeling

pkg-utils

Last released

Utilities for linking setuptools with version metadata, README files, requirements files, and restoring overridden entry points

conv-opt

Last released

High-level Python package for solving linear and quadratic optimization problems using multiple solvers

unitth

Last released

Python interface for UnitTH unit test history report generator

nose2unitth

Last released

Convert nose-style test reports to UnitTH-style test reports

wc-sandbox

Last released

Jupyter playground for whole-cell modeling

wc-cli

Last released

Whole-cell models and whole-cell modeling tools

h1-hesc

Last released

Whole-cell model of H1 human embryonic stem cells (hESCs)

wc-env-manager

Last released

Tools for managing computing environments for whole-cell modeling

karr-lab-build-utils

Last released

Karr Lab build utilities

wc-test

Last released

Methods for testing whole-cell knowledge bases and models

wc-sim

Last released

Sequential whole-cell model simulator

wc-rules

Last released

Language for describing whole-cell models

wc-model-gen

Last released

Framework for systematically and scalably designing whole-cell models from large datasets such as `wc_kb`

test-history-server

Last released

Unit test history server

wc-lang

Last released

Language for describing whole-cell models

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