24 projects
conv-opt
High-level Python package for solving linear and quadratic optimization problems using multiple solvers
de-sim
object-oriented, discrete-event simulation tool for data-intensive modeling of complex systems
wc-utils
Utilities for whole-cell modeling
obj-tables
Tools for creating and reusing high-quality spreadsheets
gdoc-down
Download Google documents to files
bcforms
Toolkit for concretely describing macromolecular complexes
bpforms
Unambiguous representation of modified DNA, RNA, and proteins
karr-lab-aws-manager
Package to manage aws services run by karr lab
datanator-query-python
A package to query and format the data in the integrated Datanator database
wc-onto
Ontology for whole-cell modeling
pkg-utils
Utilities for linking setuptools with version metadata, README files, requirements files, and restoring overridden entry points
unitth
Python interface for UnitTH unit test history report generator
nose2unitth
Convert nose-style test reports to UnitTH-style test reports
wc-sandbox
Jupyter playground for whole-cell modeling
wc-cli
Whole-cell models and whole-cell modeling tools
h1-hesc
Whole-cell model of H1 human embryonic stem cells (hESCs)
wc-env-manager
Tools for managing computing environments for whole-cell modeling
karr-lab-build-utils
Karr Lab build utilities
wc-test
Methods for testing whole-cell knowledge bases and models
wc-sim
Sequential whole-cell model simulator
wc-rules
Language for describing whole-cell models
wc-model-gen
Framework for systematically and scalably designing whole-cell models from large datasets such as `wc_kb`
test-history-server
Unit test history server
wc-lang
Language for describing whole-cell models
