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Karr Lab

Username    karrlab
Date joined   Joined on

25 projects

obj-tables

Last released on

Toolkit for modeling complex datasets with collections of user-friendly tables

Biosimulations-utils

Last released on

Utilities for generating and parsing documents encoded in biomodeling standards such as the Systems Biology Markup Language (SBML) and the Simulation Experiment Description Markup Language (SED-ML).

datanator-query-python

Last released on

A package to query and format the data in the integrated Datanator database

biosimulations-query

Last released on

A python package for querying the biosimulations database

wc-utils

Last released on

Utilities for whole-cell modeling

wc-onto

Last released on

Ontology for whole-cell modeling

karr-lab-aws-manager

Last released on

Package to manage aws services run by karr lab

bcforms

Last released on

Toolkit for concretely describing macromolecular complexes

bpforms

Last released on

Unambiguous representation of modified DNA, RNA, and proteins

pkg-utils

Last released on

Utilities for linking setuptools with version metadata, README files, requirements files, and restoring overridden entry points

conv-opt

Last released on

High-level Python package for solving linear and quadratic optimization problems using multiple solvers

gdoc-down

Last released on

Download Google documents to files

unitth

Last released on

Python interface for UnitTH unit test history report generator

nose2unitth

Last released on

Convert nose-style test reports to UnitTH-style test reports

wc-sandbox

Last released on

Jupyter playground for whole-cell modeling

wc-cli

Last released on

Whole-cell models and whole-cell modeling tools

h1-hesc

Last released on

Whole-cell model of H1 human embryonic stem cells (hESCs)

wc-env-manager

Last released on

Tools for managing computing environments for whole-cell modeling

karr-lab-build-utils

Last released on

Karr Lab build utilities

wc-test

Last released on

Methods for testing whole-cell knowledge bases and models

wc-sim

Last released on

Sequential whole-cell model simulator

wc-rules

Last released on

Language for describing whole-cell models

wc-model-gen

Last released on

Framework for systematically and scalably designing whole-cell models from large datasets such as `wc_kb`

test-history-server

Last released on

Unit test history server

wc-lang

Last released on

Language for describing whole-cell models

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