5 projects
cryptogenotyper
CryptoGenotyper is a tool that allows for subtyping the parasite, Cryptosporidium
ectyper
Escherichia coli fast serotyping using both raw reads and assemblies with automatic species identification
sequenoscope
Description
sistr-cmd
Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen geneand cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.
mob-suite
MOB-suite is a set of tools for finding, typing and reconstruction of plasmids from draft and complete genome assemblies.
