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  Joined on Jan 23, 2014

12 projects


Last released on Sep 11, 2017

kdm-snakemake-helpers: useful code often in snakefiles


Last released on May 8, 2017

Detects phasing of 5'PARE data around stop codons


Last released on Apr 27, 2017

MPG: Markov Process Generator of DNA sequences


Last released on Apr 26, 2017

pymer: Pythonic fast k-mer counting routines


Last released on Feb 26, 2017

SRApy: Scripts to download SRA files


Last released on Aug 25, 2016

timestream: Utilities and a python library for manipulating timelapses in the TimeStream format


Last released on May 27, 2016

RADsim: simulate reduced-represention sequencing platforms based on restriction digestion, including RADseq and GBS.


Last released on Apr 9, 2016

kwip in python


Last released on Mar 28, 2016

frisk: Detection of sequence composition anomalies using multiple order kmers.


Last released on Jun 10, 2015

exif2timestream: Rename image files into a timestream from exif data.


Last released on Jul 21, 2014

A controller module for the SpecralPhenoClimatron smart growth chambers developed in the Borevitz lab. These consist of Conviron growth cabinets and Heliospectra mulitspectral lamps


Last released on Jul 8, 2014

timestreamCLI: Tools for working with timelapse imagery in the TimeStream format

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