kdm-snakemake-helpers: useful code often in snakefiles
Detects phasing of 5'PARE data around stop codons
MPG: Markov Process Generator of DNA sequences
pymer: Pythonic fast k-mer counting routines
SRApy: Scripts to download SRA files
timestream: Utilities and a python library for manipulating timelapses in the TimeStream format
RADsim: simulate reduced-represention sequencing platforms based on restriction digestion, including RADseq and GBS.
kwip in python
frisk: Detection of sequence composition anomalies using multiple order kmers.
exif2timestream: Rename image files into a timestream from exif data.
A controller module for the SpecralPhenoClimatron smart growth chambers developed in the Borevitz lab. These consist of Conviron growth cabinets and Heliospectra mulitspectral lamps
timestreamCLI: Tools for working with timelapse imagery in the TimeStream format