6 projects
MhcVizPipe
A reporting pipeline for visualization of immunopeptidomics MS data.
proteotools
A simple Python package which lets you programmatically convert Thermo raw files using ThermoRawFileParser, run a few proteomics search engines (Comet, X! Tandem, MS-GF+), and use compiled Trans-Proteomic Pipeline (TPP) binaries without needing to compile the entire pipeline.
UpSetPlotly
A Python package for creating UpSet-style plots using the Plotly framework.
PyNetMHCpan
A simple tool for using NetMHCpan and NetMHCIIpan using multiple CPUs in a Python environment.
plotly-logo
A Python library for making amino acid sequence logos using the Plotly framework.
RawQuant
Package for extracting scan meta data and quantification information from Thermo .raw files