Toil implementation of freebayes, a a haplotype-based variant detector
A toil wrapper for cgpCaveman.
✏️ Convert and annotate of VCFs into tables.
Toil implementation of Mutect2
A python package with a Toil Job Class capable of containerized system calls.
A toil tool to merge vcfs from different callers.
🍪 A cookiecutter for the creation of toil pipelines.
Toil implementation of Strelka SNV Caller
A toil wrapper for cgpBattenberg.
A toil wrapper for cgp pindel.
A toil_wrapper got cgpBrass.
📊 Compare targets against references using Conpair.
Merge multiple vcf files and apply custom post-processing
👾 Register versioned toil container pipelines and other commands in singularity containers.
🐁 Alignment pipeline for engrafted NGS data.
🍋 CNVkit implementation with Toil.
Disambiguate reads mapping to multiple genomes. This is a frozen release with some bug fixes of the original AstraZeneca-NGS/disambiguate v1.0.
Command Line Tool to Demultiplex a paired-end fastq file into several fastq files,