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  leukgen

  Joined on Feb 9, 2018

18 projects

toil-freebayes

Last released on Jan 30, 2019

Toil implementation of freebayes, a a haplotype-based variant detector

toil-caveman

Last released on Jan 10, 2019

A toil wrapper for cgpCaveman.

click-annotvcf

Last released on Apr 11, 2019

โœ๏ธ Convert and annotate of VCFs into tables.

toil-mutect

Last released on Apr 9, 2019

Toil implementation of Mutect2

toil-container

Last released on Mar 26, 2019

A python package with a Toil Job Class capable of containerized system calls.

toil-mergevcfs

Last released on Feb 26, 2019

A toil tool to merge vcfs from different callers.

cookiecutter-toil

Last released on Jan 31, 2019

๐Ÿช A cookiecutter for the creation of toil pipelines.

toil-strelka

Last released on Jan 11, 2019

Toil implementation of Strelka SNV Caller

toil-battenberg

Last released on Jan 11, 2019

A toil wrapper for cgpBattenberg.

toil-pindel

Last released on Jan 10, 2019

A toil wrapper for cgp pindel.

toil-brass

Last released on Jan 10, 2019

A toil_wrapper got cgpBrass.

toil-conpair

Last released on Dec 14, 2018

๐Ÿ“Š Compare targets against references using Conpair.

click-mergevcfs

Last released on Dec 12, 2018

Merge multiple vcf files and apply custom post-processing

register-toil

Last released on Oct 16, 2018

๐Ÿ‘พ Register versioned toil container pipelines and other commands in singularity containers.

toil-disambiguate

Last released on Oct 11, 2018

๐Ÿ Alignment pipeline for engrafted NGS data.

toil-cnvkit

Last released on Oct 10, 2018

๐Ÿ‹ CNVkit implementation with Toil.

leukgen-disambiguate

Last released on Mar 22, 2018

Disambiguate reads mapping to multiple genomes. This is a frozen release with some bug fixes of the original AstraZeneca-NGS/disambiguate v1.0.

click-demultiplex

Last released on Mar 15, 2018

Command Line Tool to Demultiplex a paired-end fastq file into several fastq files,

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