10 projects
RSeQC
RNA-seq QC Package
cpgtools
Tools to analyze and visualize DNA methylation data
CrossMap
Lift over genomics coordinates between assemblies
cobind
collocation analysis of genomics intervals
spiker
spiker (Analysis workflow for ChIP-seq data with spike-in)
CPAT
CPAT (Coding Potential Assessment Tool)
epage
Evaluate Protein Activity with Gene Expression
epiprofile
Epidaurus is a program to visualize the epigenomic landscape of genomic regions of interest (TF bindings, TSS, etc).
FusionVet
A bioinformatics tool to visualize and evaluate *known* gene fusions
Dcon
A program to assess DNA contamination level
