11 projects
cpgtools
Python tools for DNA methylation analysis, imputation, epigenetic clocks, and cell-type deconvolution.
CrossMap
Convert genomic coordinates, annotations, and alignments between genome assemblies.
RSeQC
Quality control package for RNA-seq data.
epical
epical --- Epigenetic age Calculator
CPAT
CPAT (Coding Potential Assessment Tool).
cobind
collocation analysis of genomics intervals
spiker
spiker (Analysis workflow for ChIP-seq data with spike-in)
epage
Evaluate Protein Activity with Gene Expression
epiprofile
Epidaurus is a program to visualize the epigenomic landscape of genomic regions of interest (TF bindings, TSS, etc).
FusionVet
A bioinformatics tool to visualize and evaluate *known* gene fusions
Dcon
A program to assess DNA contamination level
