15 projects
sphae
Phage workflow
genome-entropy
Quantify information content across multiple biological representations derived from genomic sequences
contigger
Conservative, provenance-aware reconciliation of assembled contigs
eplace
ePLACE: environmental Phylogenetic Localisation and Clade Estimation - A library for analyzing eDNA sequences
PhiSpy
Prophage finder using multiple metrics
pygenetic-code
Translate DNA sequences to protein sequences using different genetic codes and translation tables
genbank-to
Convert GenBank format files to a swath of other formats
vamb-abundance-profile
A very simple package to convert the output of VAMB to an abundance table
PyDNARepeatFinder
Rapidly identify repeats in a DNA sequence
pyctv-taxonomy
Download ICTV Virus Classifications as Python Objects
py-fasta-validator
A small, lightweight, fast fasta validator written in C
superfocus
SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data
metagenomics-focus
FOCUS: An Agile Profiler for Metagenomic Data
PyFBA
A Python implementation of flux balance analysis
PPPF
Probabilistic Phage Protein Functions: Phage genomes and their annotations
