24 projects
nmdc-submission-schema
The NMDC submission schema
nmdc-schema
Schema resources for the National Microbiome Data Collaborative (NMDC)
schema-automator
Infer models, enrich with meaning for terms including enum permissible values
artl-mcp
PydanticAI and MCP approaches for getting textual representations of scientific literature from PMIDs, DOIs, etc.
biosample-enricher
Infer AI-friendly metadata about biosamples from multiple sources
weather-context-mcp
An MCP for retrieving historical weather data for a given location
landuse-mcp
An MCP for retrieving land use data for a given location
ols-mcp
MCP for retrieving things from the Ontology Lookup Service
oak-mcp
A model context protocol (MCP) to help agents interact with ontologies and the ontology access kit
schemasheets
Package to author schemas using spreadsheets
sheets-and-friends
Enhance a LinkML model with imported and optionally modified slots
llm_github
Tools for extracting knowledge from GitHub issues, PR comments, etc.
exhaustion-check
gen-pop-linkml2sheets
cleanroom-schema
Cleanroom reboot of NMDC schema
synbio-schema
A schema for synthetic biology, inspired by IARPA FELIX
sheets-for-person-schema
Files for schemasheets exercises at ICBO 2022
mixs-linkml
A LinkML model for the MIxS standard
hident
linkml-model-enrichment
Infer models, enrich with meaning for terms including enum permissible values
crdch-model
CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH). This Python package contains the dataclasses necessary to build and operate over data objects according to the CRDC-H model.
iot-to-linkml
see https://github.com/microbiomedata/IoT_to_linkml
badexperiment
see https://github.com/turbomam/badexperiment
scoped-mapping
Use orthogonal data to determine what ontologies should be used for mapping strings
