2 projects
sc-resolute
RESOLUTE is a Python package designed for selecting the optimal clustering resolution in Scanpy-based single-cell and spatial transcriptomics analyses, leveraging geometric metrics and topological stability evaluation.
BaCHClue
BaCHClue helps to find the optimal resolution parameter for clustering scRNA-seq data analyzed with Scanpy, by calculating the BIC score or the Calinski-Harabasz score of each clustering given an interval of possible resolutions.