19 projects
nnunetv2
nnU-Net is a framework for out-of-the box image segmentation.
dynamic-network-architectures
none
voxtell
Free-Text Promptable Universal 3D Medical Image Segmentation
patchly
A grid sampler for N-dimensional images
AVID
AVID is a Python framework for declarative, data-driven processing of large-scale image datasets, particularly designed for biomedical image analysis workflows.
radtract
Radiomic Tractometry for advanced along-tract analysis of diffusion-weighted MRI
acvl-utils
Super cool utilities that we just love to use
napari-nifti
A napari plugin for reading and writing NIFTI files that have the extension .nii or .nii.gz.
batchgenerators
Data augmentation toolkit
mzarr
Mzarr (Multi-Resolution Zarr) is a Python library for working with the Mzarr image format
tqdmp
Multiprocessing with tqdm progressbars!
ParticleSeg3D
Scalable, out-of-the box segmentation of individual particles from mineral samples acquired with micro CT
napari-mzarr
A reader and writer plugin for the Mzarr image format.
napari-sam
Segment anything with Meta AI's new SAM model!
cmdint
Enables detailed logging of command line calls in a very lightweight manner.
nnunet
nnU-Net. Framework for out-of-the box biomedical image segmentation.
hd-glio
Tool for brain tumor segmentation. This is the result of a joint project between the Department of Neuroradiology at the Heidelberg University Hospital and the Division of Medical Image Computing at the German Cancer Research Center (DKFZ). See readme.md for more information
hd-gliomouse
Tool for brain tumor segmentation in mice. This is the result of a joint project between the Department of Neuroradiology at the Heidelberg University Hospital and the Division of Medical Image Computing at the German Cancer Research Center (DKFZ). See readme.md for more information
trixi
Manage your machine learning experiments with trixi - modular, reproducible, high fashion
