5 projects
colabfold
Making protein folding accessible to all. Predict proteins structures both in google colab and on your machine
colabfold-legacy-kernels
Prebuilt pre-Ampere (sm_70 / sm_75) CUDA kernels for ColabFold.
alphafold-colabfold
An implementation of the inference pipeline of AlphaFold v2.3.1. This is a completely new model that was entered as AlphaFold2 in CASP14 and published in Nature. This package contains patches for colabfold.
colabfold-binaries
Prebuilt kalign and hhsearch binaries for ColabFold.
foldcomp
Foldcomp compresses protein structures with torsion angles effectively. It compresses the backbone atoms to 8 bytes and the side chain to additionally 4-5 byes per residue, an averaged-sized protein of 350 residues requires ~4.2kb. Foldcomp is a C++ library with Python bindings.
